Package index • Luminescence

All functions

BaseDataSet.ConversionFactors: Base data set of dose-rate conversion factors

BaseDataSet.FractionalGammaDose: Base data set of fractional gamma-dose values

BaseDataSet.GrainSizeAttenuation: Base dataset for grain size attenuation data by Guérin et al. (2012)

ExampleData.CobbleData: Example data for calc_CobbleDoseRate()

ExampleData.DeValues: Example De data sets for the package Luminescence

ExampleData.Fading: Example data for feldspar fading measurements

ExampleData.RLum.Data.Image: Example data as RLum.Data.Image objects

ExampleData.ScaleGammaDose: Example data for scale_GammaDose()

ExampleData.SurfaceExposure: Example OSL surface exposure dating data

ExampleData.TR_OSL: Example TR-OSL data

ExampleData.portableOSL: Example portable OSL curve data for the package Luminescence

github_commits() github_branches() github_issues(): GitHub API

Luminescence-package Luminescence: Comprehensive Luminescence Dating Data Analysis

RLum-class: Class "RLum"

RLum.Analysis-class: Class "RLum.Analysis"

RLum.Data.Curve-class: Class "RLum.Data.Curve"

RLum.Data.Image-class: Class "RLum.Data.Image"

RLum.Data.Spectrum-class: Class "RLum.Data.Spectrum"

RLum.Results-class: Class "RLum.Results"

set_Risoe.BINfileData(<ANY>): Class "Risoe.BINfileData"

Risoe.BINfileData2RLum.Analysis(): Convert Risoe.BINfileData object to an RLum.Analysis object

analyse_Al2O3C_CrossTalk(): Al2O3:C Reader Cross-Talk Analysis

analyse_Al2O3C_ITC(): Al2O3 Irradiation Time Correction Analysis

analyse_Al2O3C_Measurement(): Al2O3:C Passive Dosimeter Measurement Analysis

analyse_FadingMeasurement(): Analyse fading measurements and returns the fading rate per decade (g-value)

analyse_IRSAR.RF(): Analyse IRSAR RF measurements

analyse_SAR.CWOSL(): Analyse SAR CW-OSL Measurements

analyse_SAR.TL(): Analyse SAR TL measurements

analyse_baSAR(): Bayesian models (baSAR) applied on luminescence data

analyse_pIRIRSequence(): Analyse post-IR IRSL measurement sequences

analyse_portableOSL(): Analyse portable CW-OSL measurements

apply_CosmicRayRemoval(): Cosmic-ray removal and spectrum smoothing for RLum.Data.Spectrum objects

apply_Crosstalk(): Apply crosstalk

apply_EfficiencyCorrection(): Function to apply spectral efficiency correction to RLum.Data.Spectrum S4 class objects

as: as() - RLum-object coercion

bin_RLum.Data(): Channel binning for RLum.Data-class objects

calc_AliquotSize(): Estimate the amount of grains on an aliquot

calc_AverageDose(): Calculate the Average Dose and the dose rate dispersion

calc_CentralDose(): Apply the central age model (CAM) after Galbraith et al. (1999) to a given De distribution

calc_CobbleDoseRate(): Calculate dose rate of slices in a spherical cobble

calc_CommonDose(): Apply the (un-)logged common age model after Galbraith et al. (1999) to a given De distribution

calc_CosmicDoseRate(): Calculate the cosmic dose rate

calc_EED_Model(): Modelling Exponential Exposure Distribution

calc_FadingCorr(): Fading Correction after Huntley & Lamothe (2001)

calc_FastRatio(): Calculate the Fast Ratio for CW-OSL curves

calc_FiniteMixture(): Apply the finite mixture model (FMM) after Galbraith (2005) to a given De distribution

calc_FuchsLang2001(): Apply the model after Fuchs & Lang (2001) to a given De distribution

calc_HomogeneityTest(): Apply a simple homogeneity test after Galbraith (2003)

calc_Huntley2006(): Apply the Huntley (2006) model

calc_IEU(): Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution

calc_Lamothe2003(): Apply fading correction after Lamothe et al., 2003

calc_MaxDose(): Apply the maximum age model to a given De distribution

calc_MinDose(): Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999) to a given De distribution

calc_MoransI(): Calculate Moran's I

calc_OSLLxTxDecomposed(): Calculate Lx/Tx ratio for decomposed CW-OSL signal components

calc_OSLLxTxRatio(): Calculate Lx/Tx ratio for CW-OSL curves

calc_SourceDoseRate(): Calculation of the source dose rate via the date of measurement

calc_Statistics(): Function to calculate statistic measures

calc_TLLxTxRatio(): Calculate the Lx/Tx ratio for a given set of TL curves -beta version-

calc_ThermalLifetime(): Calculates the Thermal Lifetime using the Arrhenius equation

calc_WodaFuchs2008(): Obtain the equivalent dose using the approach by Woda and Fuchs 2008

calc_gSGC(): Calculate De value based on the gSGC by Li et al., 2015

calc_gSGC_feldspar(): Calculate Global Standardised Growth Curve (gSGC) for Feldspar MET-pIRIR

combine_De_Dr(): Combine Dose Rate and Equivalent Dose Distribution

convert_Activity2Concentration(): Convert Nuclide Activities to Abundance and Vice Versa

convert_BIN2CSV(): Export Risoe BIN-file(s) to CSV-files

convert_CW2pHMi() CW2pHMi(): Transform a CW-OSL curve into a pHM-OSL curve via interpolation under hyperbolic modulation conditions

convert_CW2pLM() CW2pLM(): Transform a CW-OSL curve into a pLM-OSL curve

convert_CW2pLMi() CW2pLMi(): Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear modulation conditions

convert_CW2pPMi() CW2pPMi(): Transform a CW-OSL curve into a pPM-OSL curve via interpolation under parabolic modulation conditions

convert_Concentration2DoseRate(): Dose-rate conversion function

convert_Daybreak2CSV(): Export measurement data produced by a Daybreak luminescence reader to CSV-files

convert_PSL2CSV(): Export PSL-file(s) to CSV-files

convert_PSL2Risoe.BINfileData(): Convert portable OSL data to a Risoe.BINfileData object

convert_RLum2Risoe.BINfileData(): Converts RLum.Analysis and RLum.Data.Curve objects to RLum2Risoe.BINfileData objects

convert_SG2MG(): Converts Single-Grain Data to Multiple-Grain Data

convert_Second2Gray(): Converting equivalent dose values from seconds (s) to Gray (Gy)

convert_Wavelength2Energy(): Emission Spectra Conversion from Wavelength to Energy Scales (Jacobian Conversion)

convert_XSYG2CSV(): Export XSYG-file(s) to CSV-files

correct_PMTLinearity(): Linearity Correction for Photomultiplier tubes (PMT)

extdata: Collection of External Data

extract_IrradiationTimes(): Extract Irradiation Times from an XSYG-file or RLum.Analysis object

extract_ROI(): Extract Pixel Values through Circular Region-of-Interests (ROI) from an Image

fit_CWCurve(): Nonlinear Least Squares Fit for CW-OSL curves -beta version-

fit_DoseResponseCurve(): Fit a dose-response curve for luminescence data (Lx/Tx against dose)

fit_EmissionSpectra(): Luminescence Emission Spectra Deconvolution

fit_LMCurve(): Non-linear Least Squares Fit for LM-OSL curves

fit_OSLLifeTimes(): Fitting and Deconvolution of OSL Lifetime Components

fit_SurfaceExposure(): Nonlinear Least Squares Fit for OSL surface exposure data

fit_ThermalQuenching(): Fitting Thermal Quenching Data

get_Layout(): Collection of layout definitions

get_RLum(): General accessor function for RLum-class objects

get_rightAnswer(): Function to get the right answer

import_Data(): Import Luminescence Data into R

install_DevelopmentVersion(): Attempts to install the development version of the 'Luminescence' package

length_RLum(): Length retrieval function for RLum-class objects

melt_RLum(): Melt RLum-class objects into a flat data.frame

merge_RLum(): General merge function for RLum-class objects

merge_Risoe.BINfileData(): Merge Risoe.BINfileData objects or Risoe BIN-files

`add_metadata<-`() `rename_metadata<-`() `replace_metadata<-`(): Safe manipulation of object metadata

names_RLum(): Name retrieval function for RLum-class objects

plot_AbanicoPlot(): Function to create an Abanico Plot.

plot_DRCSummary(): Create a Dose-Response Curve Summary Plot

plot_DRTResults(): Visualise dose recovery test results

plot_DetPlot(): Create De(t) plot

plot_DoseResponseCurve(): Plot a dose-response curve for luminescence data (Lx/Tx against dose)

plot_FilterCombinations(): Plot filter combinations along with the (optional) net transmission window

plot_GrowthCurve(): Fit and plot a dose-response curve for luminescence data (Lx/Tx against dose)

plot_Histogram(): Plot a histogram with separate error plot

plot_KDE(): Plot kernel density estimate with statistics

plot_MoranScatterplot(): Moran Scatter Plot: Visualizing Spatial Dependency

plot_NRt(): Visualise natural/regenerated signal ratios

plot_OSLAgeSummary(): Plot Posterior OSL-Age Summary

plot_RLum.Analysis(): Plot function for an RLum.Analysis S4 class object

plot_RLum.Data.Curve(): Plot function for an RLum.Data.Curve S4 class object

plot_RLum.Data.Image(): Plot function for an RLum.Data.Image S4 class object

plot_RLum.Data.Spectrum(): Plot function for an RLum.Data.Spectrum S4 class object

plot_RLum(): General plot function for RLum S4 class objects

plot_RLum.Results(): Plot function for an RLum.Results S4 class object

plot_ROI(): Create Regions of Interest (ROI) Graphic

plot_RadialPlot(): Function to create a Radial Plot

plot_Risoe.BINfileData(): Plot Single Luminescence Curves from a Risoe.BINfileData-class object

plot_SingleGrainDisc(): Plot a disc with its values

plot_ViolinPlot(): Create a violin plot

read_BIN2R(): Import Risø BIN/BINX-files into R

read_Daybreak2R(): Import measurement data produced by a Daybreak TL/OSL reader into R

read_HeliosOSL2R(): Import Luminescence Data from Helios Luminescence Reader

read_PSL2R(): Import PSL files to R

read_RF2R(): Import RF-files to R

read_SPE2R(): Import Princeton Instruments (TM) SPE-file into R

read_TIFF2R(): Import TIFF Image Data into R

read_XSYG2R(): Import XSYG files to R

remove_RLum(): Strips records from RLum-class objects

remove_SignalBackground(): Remove Signal Background from RLum.Data.Curve Objects

replicate_RLum(): General replication function for RLum-class objects

report_RLum(): Create a HTML-report for (RLum) objects

sTeve(): sTeve - sophisticated tool for efficient data validation and evaluation

scale_GammaDose(): Calculate the gamma dose deposited within a sample taking layer-to-layer variations in radioactivity into account (according to Aitken, 1985)

set_RLum(): General setter function for RLum-class objects

set_Risoe.BINfileData(): General setter function for Risoe.BINfileData objects

show(<RLum.Analysis>) show(<RLum.Data.Curve>) show(<RLum.Data.Image>) show(<RLum.Data.Spectrum>) show(<RLum.Results>) show(<Risoe.BINfileData>): Show the structure of RLum-class and Risoe.BINfileData-class objects

smooth_RLum(): Smoothing of data for RLum-class objects

sort_RLum(): Sort data for RLum-class and Risoe.BINfileData-class objects

structure_RLum(): General structure function for RLum-class objects

subset_SingleGrainData(): Simple Subsetting of Single Grain Data from Risø BIN/BINX files

template_DRAC(): Create a DRAC input data template (v1.2)

trim_RLum.Data(): Trim Channels of RLum.Data-class Objects

tune_Data(): Tune data for experimental purpose

use_DRAC(): Use DRAC to calculate dose rate data

verify_SingleGrainData(): Verify single grain data sets and check for invalid grains, i.e. zero-light level grains

view(): Convenience data visualisation function

write_R2BIN(): Export Risoe.BINfileData into Risø BIN/BINX-file

write_R2TIFF(): Export RLum.Data.Image and RLum.Data.Spectrum objects to TIFF Images

write_RLum2CSV(): Export RLum-objects to CSV